The published work behind Titan-1.

Short-read and long-read approaches compared head to head, and where each one’s resolution runs out.

The paper introducing the long rRNA amplicon the platform is built on, applied to enteric bacteria in preterm infants.

Extraction and amplification choices, which decide what DNA reaches the sequencer in the first place.

Direct comparison of lysis and amplification methods, the step that decides which organisms are recoverable at all.

How isolation and sequencing choices change the answer in low-biomass samples, where method artifacts are hardest to separate from biology.

Compares a short 16S target against the longer 16S-23S region on the same samples.

Storage and cryopreservation effects on stool, relevant to how a mailed sample is handled before it reaches a lab.

Early bowel polyps profiled with both short-read and long-read 16S, in the same patients.

Human surgical cohorts plus preclinical models, testing whether intestinal dysbiosis carries predictive information.

Age-associated shifts in the gut community, resolved with long-read 16S.

Species-level competition between Klebsiella in preterm infants, a distinction that is invisible at genus level.

Vaginal microbiota and the preterm birth cascade.

Microbiome change tracked alongside fecal volatile organic compounds in experimental NEC.

A supplementation intervention assessed against outcomes in a murine NEC model.

Maternal exercise and the offspring gut microbiome. Listed in the Intus bibliography as a university repository record rather than a journal article.

Gut microbiota characteristics against non-motor symptoms in Parkinson disease, across treatment types.

Maternal psychological state against measured diversity and bifidobacterial abundance in offspring.

Pilot human pregnancy study of stress- and depression-associated shifts in the gut community.

Community dynamics tracked against a behavioral phenotype in two genetically distinct mouse strains.

Strain-level characterization surfacing previously undescribed human strains in prediabetes and type 2 diabetes.

A mechanistic route from gut community to bone, via short-chain fatty acid signaling, in a disease model.

A biomarker signature for diagnosing MIS-C. Included in the Intus bibliography as a collaboration; it is a diagnostics paper rather than a microbiome sequencing one.

Distinguishing closely related Escherichia species, the same identification problem long-read resolution addresses at scale.

Long-read metabarcoding applied to food safety surveillance.

Body-site resolution of microbial populations in healthy horses.

Baseline stability of microbial populations under changing environmental conditions.

Species-level tracking of antibiotic-induced dysbiosis and what follows it.

Short-read and long-read sequencing compared on the same samples, against a physiological outcome.

Strain-level characterization of candidate probiotic organisms.

Metabolic shifts in a gut community following antibiotic exposure.

Diet duration, antibiotic treatment and disease development considered together. Posted as a preprint and not peer reviewed.

How experimental choices change the community you appear to measure.

Community analysis applied to hazard identification in controlled-environment agriculture.